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GDR BLAST Server
Program blastn blastp blastx tblastn tblastx Database NCBI Fragaria EST NCBI Malus EST NCBI Prunus EST NCBI Pyrus EST NCBI Rosa EST NCBI Rubus EST NCBI Rosaceae EST GDR Fragaria unigene V4 GDR Fragaria unigene V3 GDR Prunus unigene V3 GDR Rosa unigene V4 GDR Rosa unigene V3 GDR Rosa unigene V2 GDR Rosaceae unigene V3 GDR Fragaria unigene V2 GDR Malus unigene V4 GDR Malus unigene V3 GDR Malus unigene V2 GDR Prunus unigene V2 GDR Pyrus unigene V4 GDR Rubus unigene V4 GDR Rosaceae unigene V2 Fragaria Fosmids Rosaceae Genomic Rosaceae Proteins Arabidopsis Proteins Populus Proteins TIGR Plant Repeats 020409 BAC anchored peach EST peach ESTs mapped by sharing BAC peach ESTs mapped by sharing BAC contigs peach mesocarp ESTs peach mesocarp ESTs (PP_LEa) peach mesocarp EST unigene (PP_LEa) peach shoot ESTs (PP_LEc) peach shoot EST unigene (PP_LEc) peach shoot unigene (PP_LEc) containing SSRs peach mesocarp ESTs (PP_YE) peach mesocarp EST unigene (PP_YE) peach mesocarp unigene (PP_YE) containing SSRs almond EST unigene (PA__E) almond ESTs (PA__E) octoploid strawberry ESTs (FA_SE) octoploid strawberry EST unigene (FA_SE) octoploid strawberry unigene (FA_SE) containing SSRs diploid strawberry ESTs (Davis) diploid strawberry EST unigene (Davis) diploid strawberry unigene (Davis) containing SSRs
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From       To
Expect 0.0000001 0.000001 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options: